Michael Grünstäudl (Gruenstaeudl), PhD

Researcher at the Freie Universität Berlin

Monatsarchiv für Februar 2017

Alignment Nex2Phy few-liner

Alignment file format conversion for the efficient Today, I needed to convert a series of alignments, which were stored in the common nexus format, into newick format. In order to do this efficiently, I wrote the following few-liner. #!/usr/bin/env python2.7 import sys from Bio import AlignIO inFn = sys.argv[1] inp = open(inFn, ‚rU‘) outp = […]

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